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Intron Name: Anas_platyrhynchos_platyrhynchos_1_40438646_40439194_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40438646 - 40439194

Intron Length:

549

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

TTTGACTTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCAAT

U12 Branch Point Sequence:

TTCTCTTTCAAT

Flanking Amino Acid:

ETHSSSDVTIGPRLFLPCPM

Intron Amino Acid Position:

2038

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

79.6

35.4

Major BPS

76.9

0.67

1.2

31.9

Major PPT

0.68

0.9

77.2

36.7

Minor 5ss

34.9

-1.7

3.1

47.1

42.6

Minor BPS

61.2

0.43

1.9

80.63

41.5

Associated Gene:

Gene:

NAV3

Ensembl Gene ID:

ENSAPLG00000014672

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024052

40175386 - 40446672

271287

ENSAPLT00000020353

40175386 - 40446672

271287

ENSAPLT00000046946

40175386 - 40446672

271287

ENSAPLT00000019516

40256579 - 40446672

190094

ENSAPLT00000039035

40256579 - 40446672

190094

ENSAPLT00000015318

40175386 - 40446672

271287

ENSAPLT00000030444

40256579 - 40446672

190094