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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40442201_40444459_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40442201 - 40444459
Intron Length:
2259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
ATTATGTAAACA
Flanking Amino Acid:
PQTDTEGDPLMNMLMRLQEA
Intron Amino Acid Position:
2146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
83.3
29.1
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
44
-0.6
3.2
62.3
43.4
Minor BPS
47.5
-0.1
2.3
65.75
40.9

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020353
40175386 - 40446672
271287
ENSAPLT00000046946
40175386 - 40446672
271287
ENSAPLT00000019516
40256579 - 40446672
190094
ENSAPLT00000039035
40256579 - 40446672
190094
ENSAPLT00000015318
40175386 - 40446672
271287
ENSAPLT00000030444
40256579 - 40446672
190094
ENSAPLT00000024052
40175386 - 40446672
271287