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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40714648_40756434_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
40714648 - 40756434
Intron Length:
41787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTCA
5'SS Class:
major
3'SS Sequence:
GTTTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTCTTACAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.2
33.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.7
0.89
0.7
84.2
30.9
Minor 5ss
46.6
-0.3
2.4
59.8
44.6
Minor BPS
63.2
0.28
1.8
72.05
40.8

Associated Gene:

Gene:
SYT1
Ensembl Gene ID:
ENSAPLG00000014912
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021715
40713743 - 40984849
271107
ENSAPLT00000015570
40714533 - 40985681
271149