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Intron Name: Anas_platyrhynchos_platyrhynchos_1_40807275_40858134_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40807275 - 40858134

Intron Length:

50860

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAATAAG

5'SS Class:

major

3'SS Sequence:

TTTTTCCCAACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

TTTTTCCCAACA

Flanking Amino Acid:

FSALATYITSTASTGVKMVS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.5

0.41

1.1

65.3

40.4

Major BPS

87.6

0.93

0.9

89.3

Major PPT

82.3

0.73

0.8

78.5

28.8

Minor 5ss

36.6

-1.5

2.9

47.4

42.3

Minor BPS

62.5

0.39

1.9

80.29

35.2

Associated Gene:

Gene:

SYT1

Ensembl Gene ID:

ENSAPLG00000014912

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047319

40807217 - 40985681

178465