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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4083078_4100859_F

Intron Information:

Intron Rank:
123521
Intron Class:
major
Intron Phase:
Intron Coordinates:
4083078 - 4100859
Intron Length:
17782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCTTTTTGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
87.1
0.83
0.6
85.7
21.4
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
49.3
0.03
1.9
71.39
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016616
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029884
4082257 - 4107200
24944