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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40893686_40906161_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40893686 - 40906161
Intron Length:
12476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTAACT
Flanking Amino Acid:
KDLGKTMKDQALKDDDAETG
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.4
33.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.4
0.75
0.7
76.6
32
Minor 5ss
36.4
-1.5
3.4
49.2
47.3
Minor BPS
75.9
0.89
1.5
90.34
32.7

Associated Gene:

Gene:
SYT1
Ensembl Gene ID:
ENSAPLG00000014912
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047319
40807217 - 40985681
178465
ENSAPLT00000021715
40713743 - 40984849
271107
ENSAPLT00000015570
40714533 - 40985681
271149