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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40906285_40909397_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40906285 - 40909397
Intron Length:
3113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGAAAC
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATATTTGAAATT
Flanking Amino Acid:
SLDYDFQNNQLLVGIIQAAE
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
68.9
35.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.8
0.83
0.7
84.4
30.5
Minor 5ss
36.2
-1.6
2.7
43.5
43.8
Minor BPS
45.6
-0.2
2.2
65.81
39.9

Associated Gene:

Gene:
SYT1
Ensembl Gene ID:
ENSAPLG00000014912
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047319
40807217 - 40985681
178465
ENSAPLT00000021715
40713743 - 40984849
271107
ENSAPLT00000015570
40714533 - 40985681
271149