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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40909566_40912972_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40909566 - 40912972
Intron Length:
3407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCTTCTTTACAG
Flanking Amino Acid:
PVFNEQFTFKVPYSELGGKT
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.4
30.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
88.3
0.86
0.7
83
25.5
Minor 5ss
58.1
0.27
2.3
76
39.6
Minor BPS
57.4
0.09
1.8
63.96
44.2

Associated Gene:

Gene:
SYT1
Ensembl Gene ID:
ENSAPLG00000014912
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047319
40807217 - 40985681
178465
ENSAPLT00000021715
40713743 - 40984849
271107
ENSAPLT00000015570
40714533 - 40985681
271149