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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40913141_40933318_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40913141 - 40933318
Intron Length:
20178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTCTTTCACA
Flanking Amino Acid:
RDLQSAEKEEQEKLGDICFS
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
91.2
0.93
0.6
87.3
23.1
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
75.9
0.81
1.6
86.93
31.8

Associated Gene:

Gene:
SYT1
Ensembl Gene ID:
ENSAPLG00000014912
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047319
40807217 - 40985681
178465
ENSAPLT00000021715
40713743 - 40984849
271107
ENSAPLT00000015570
40714533 - 40985681
271149