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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40979814_40984642_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40979814 - 40984642
Intron Length:
4829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTCA
5'SS Class:
major
3'SS Sequence:
TGTCTCCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCATTCTCACTG
Flanking Amino Acid:
SFEVPFEQIQKVQIVVTVLD
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79.3
0.66
0.8
74
31.1
Minor 5ss
37.1
-1.5
3.2
48.4
47.2
Minor BPS
47.1
-0.3
1.8
51.49
43.6

Associated Gene:

Gene:
SYT1
Ensembl Gene ID:
ENSAPLG00000014912
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021715
40713743 - 40984849
271107
ENSAPLT00000015570
40714533 - 40985681
271149
ENSAPLT00000047319
40807217 - 40985681
178465