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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4100609_4100859_F

Intron Information:

Intron Rank:
123524
Intron Class:
major
Intron Phase:
Intron Coordinates:
4100609 - 4100859
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCTTTTTGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.9
42.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
87.1
0.83
0.6
85.7
21.4
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
49.3
0.03
1.9
71.39
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016616
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034982
4100269 - 4107200
6932