About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4101015_4102382_F

Intron Information:

Intron Rank:
123522
Intron Class:
major
Intron Phase:
Intron Coordinates:
4101015 - 4102382
Intron Length:
1368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CTTTACTCATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
71.2
0.48
1
68.8
37.5
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
50.7
0.02
2
68.7
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016616
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034982
4100269 - 4107200
6932
ENSAPLT00000029884
4082257 - 4107200
24944