Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41013306_41018781_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41013306 - 41018781

Intron Length:

5476

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAAGAT

5'SS Class:

major

3'SS Sequence:

TTTTCCTTCGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATCAAA

U12 Branch Point Sequence:

AATTCTGTAAGT

Flanking Amino Acid:

TLLKVVGQLTRRKFC*

Intron Amino Acid Position:

204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

1.1

68.4

36.7

Major BPS

59.9

0.25

1.2

34.4

Major PPT

84.4

0.77

0.6

81.2

23.8

Minor 5ss

30.1

-2.3

3.7

46.1

49.1

Minor BPS

0.14

2.2

75.1

41.9

Associated Gene:

Gene:

PAWR

Ensembl Gene ID:

ENSAPLG00000027740

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047270

41012056 - 41094892

82837