About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41057783_41093801_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41057783 - 41093801
Intron Length:
36019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAA
U12 Branch Point Sequence:
AATTGTATAACT
Flanking Amino Acid:
FPAIPYLRTKSLDEYEDDEA
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1.1
72.4
39.5
Major BPS
52.6
0.07
1
59.7
32.6
Major PPT
89.4
0.89
0.7
88.9
28.2
Minor 5ss
37.6
-1.4
3.2
49.9
46.3
Minor BPS
54.6
0.22
2
76.53
39.8

Associated Gene:

Gene:
PAWR
Ensembl Gene ID:
ENSAPLG00000027740
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047270
41012056 - 41094892
82837