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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41113978_41120640_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41113978 - 41120640
Intron Length:
6663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCATTTTTGATA
Flanking Amino Acid:
RISEMEEELKMLPDLKADNQ
Intron Amino Acid Position:
967

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
74.2
0.55
1
72.3
37.6
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
62.2
0.38
1.1
65.43
35.4

Associated Gene:

Gene:
PPP1R12A
Ensembl Gene ID:
ENSAPLG00000015197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039875
41112823 - 41236452
123630
ENSAPLT00000035807
41112823 - 41236452
123630
ENSAPLT00000027679
41112823 - 41236452
123630