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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41118986_41120640_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
41118986 - 41120640
Intron Length:
1655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGATTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTCTTTGATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.9
0.67
0.9
74.1
36.5
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
79
1
1
88.92
28.9

Associated Gene:

Gene:
PPP1R12A
Ensembl Gene ID:
ENSAPLG00000015197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032737
41118436 - 41236452
118017
ENSAPLT00000015944
41118948 - 41236452
117505