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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41120692_41125080_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41120692 - 41125080
Intron Length:
4389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTTCTGATTT
Flanking Amino Acid:
DRSLLEMEKRERRALERRIS
Intron Amino Acid Position:
950

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
78.3
32.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.6
0.64
0.9
78.2
35.4
Minor 5ss
38.9
-1.3
2.9
44.3
43.6
Minor BPS
59.5
0.38
1.7
78.82
37.6

Associated Gene:

Gene:
PPP1R12A
Ensembl Gene ID:
ENSAPLG00000015197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035807
41112823 - 41236452
123630
ENSAPLT00000032737
41118436 - 41236452
118017
ENSAPLT00000027679
41112823 - 41236452
123630
ENSAPLT00000039875
41112823 - 41236452
123630