Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41121798_41125080_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41121798 - 41125080

Intron Length:

3283

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TTGTATCTGAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

TTAAACTAAATT

Flanking Amino Acid:

DRSLLEMEKRVTGKSQYLLG

Intron Amino Acid Position:

1030

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

78.3

32.5

Major BPS

73.8

0.59

0.9

26.8

Major PPT

61.7

0.26

1.2

63.7

41.8

Minor 5ss

38.9

-1.3

2.9

44.3

43.6

Minor BPS

54.2

0.21

1.9

74.74

41.9

Associated Gene:

Gene:

PPP1R12A

Ensembl Gene ID:

ENSAPLG00000015197

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015944

41118948 - 41236452

117505