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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41125129_41126045_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41125129 - 41126045
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
TTCTGTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTCTATTAATT
Flanking Amino Acid:
LKLQLEKTTQRQERFADRSL
Intron Amino Acid Position:
1014

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.7
0.74
0.9
80.2
37.3
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
63
0.49
1.6
78.06
38.5

Associated Gene:

Gene:
PPP1R12A
Ensembl Gene ID:
ENSAPLG00000015197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035807
41112823 - 41236452
123630
ENSAPLT00000032737
41118436 - 41236452
118017
ENSAPLT00000027679
41112823 - 41236452
123630
ENSAPLT00000015944
41118948 - 41236452
117505
ENSAPLT00000039875
41112823 - 41236452
123630