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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41125934_41126045_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41125934 - 41126045
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
TTCTTATTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTC
Flanking Amino Acid:
LKLQLEKTTQMGVKKSTSLF
Intron Amino Acid Position:
975

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
73.2
0.52
1
74.6
33
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
66.7
0.5
1.5
74.49
36.5

Associated Gene:

Gene:
PPP1R12A
Ensembl Gene ID:
ENSAPLG00000015197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033917
41125784 - 41236452
110669