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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41126980_41127603_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41126980 - 41127603
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TTTTCTTTTACA
Flanking Amino Acid:
KKETQSDSLSRYDTGSLSVS
Intron Amino Acid Position:
931

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.9
Major BPS
60.3
0.26
1
65.5
28
Major PPT
95.6
1.03
0.5
91.4
20.1
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
77.6
0.86
1.5
87.29
30.4

Associated Gene:

Gene:
PPP1R12A
Ensembl Gene ID:
ENSAPLG00000015197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032737
41118436 - 41236452
118017
ENSAPLT00000027679
41112823 - 41236452
123630
ENSAPLT00000039875
41112823 - 41236452
123630
ENSAPLT00000015944
41118948 - 41236452
117505
ENSAPLT00000035807
41112823 - 41236452
123630
ENSAPLT00000033917
41125784 - 41236452
110669