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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41136884_41137060_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41136884 - 41137060
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTCA
5'SS Class:
major
3'SS Sequence:
TTCTGCTGAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGTAAATTAATT
Flanking Amino Acid:
RQRYSRTVEEPYHRYRPTST
Intron Amino Acid Position:
808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.2
33.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
65.2
0.34
1
62
38.8
Minor 5ss
46.6
-0.3
2.4
59.8
44.6
Minor BPS
56.1
0.27
1.8
76.3
39.7

Associated Gene:

Gene:
PPP1R12A
Ensembl Gene ID:
ENSAPLG00000015197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015944
41118948 - 41236452
117505
ENSAPLT00000035807
41112823 - 41236452
123630
ENSAPLT00000033917
41125784 - 41236452
110669
ENSAPLT00000032737
41118436 - 41236452
118017
ENSAPLT00000027679
41112823 - 41236452
123630
ENSAPLT00000039875
41112823 - 41236452
123630