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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41139116_41142936_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41139116 - 41142936
Intron Length:
3821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTAACCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTAATTAACC
Flanking Amino Acid:
SSTSEVRERRRSYLTPVRDE
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
81
26.9
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
68.7
0.42
0.9
64.2
38.1
Minor 5ss
35.7
-1.6
2.6
41.3
45.3
Minor BPS
64.9
0.45
1.8
76.9
38.7

Associated Gene:

Gene:
PPP1R12A
Ensembl Gene ID:
ENSAPLG00000015197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015944
41118948 - 41236452
117505
ENSAPLT00000039875
41112823 - 41236452
123630
ENSAPLT00000033917
41125784 - 41236452
110669
ENSAPLT00000032737
41118436 - 41236452
118017
ENSAPLT00000027679
41112823 - 41236452
123630