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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41143114_41143557_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41143114 - 41143557
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCCA
5'SS Class:
major
3'SS Sequence:
TGTTATGCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGCTTGTTATGC
Flanking Amino Acid:
TGSTSAGVPSSTSNRLWAED
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
65.1
40.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
72.3
0.5
0.9
66.5
40.4
Minor 5ss
31.1
-2.2
3.2
40.1
45.4
Minor BPS
42.3
-0.6
2.4
53.75
44.5

Associated Gene:

Gene:
PPP1R12A
Ensembl Gene ID:
ENSAPLG00000015197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027679
41112823 - 41236452
123630
ENSAPLT00000015944
41118948 - 41236452
117505
ENSAPLT00000039875
41112823 - 41236452
123630
ENSAPLT00000033917
41125784 - 41236452
110669
ENSAPLT00000032737
41118436 - 41236452
118017