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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41143720_41149074_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41143720 - 41149074
Intron Length:
5355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTCTA
5'SS Class:
major
3'SS Sequence:
GTCTCTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTCACTGTAAAT
Flanking Amino Acid:
STSDIDEKENSGSFGRRQDD
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
74.1
38.4
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
80.6
0.69
0.8
77.4
31.4
Minor 5ss
37.9
-1.4
3
49.8
46.4
Minor BPS
49.9
0.07
2.1
73.52
43.4

Associated Gene:

Gene:
PPP1R12A
Ensembl Gene ID:
ENSAPLG00000015197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027679
41112823 - 41236452
123630