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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41149170_41149949_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41149170 - 41149949
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
ATATGTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
ACTTAGTAAAAA
Flanking Amino Acid:
LSSSLDNKEKEKDGKGTRLA
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
78.1
0.63
0.9
74.2
40.6
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
42.1
-0.6
2.4
55.69
43.1

Associated Gene:

Gene:
PPP1R12A
Ensembl Gene ID:
ENSAPLG00000015197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015944
41118948 - 41236452
117505
ENSAPLT00000035807
41112823 - 41236452
123630
ENSAPLT00000033917
41125784 - 41236452
110669
ENSAPLT00000032737
41118436 - 41236452
118017
ENSAPLT00000027679
41112823 - 41236452
123630
ENSAPLT00000039875
41112823 - 41236452
123630