Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41150166_41150527_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41150166 - 41150527

Intron Length:

362

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGGTTC

5'SS Class:

major

3'SS Sequence:

CTGTGTTTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

TAGCCTTTAATT

Flanking Amino Acid:

LVPNKGEKSMFPTSTSKVSP

Intron Amino Acid Position:

454

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

0.9

71.7

34.3

Major BPS

0.82

0.8

24.9

Major PPT

81.8

0.71

0.9

75.6

38.3

Minor 5ss

-1.6

3.4

46.6

43.5

Minor BPS

71.2

0.74

1.2

78.45

Associated Gene:

Gene:

PPP1R12A

Ensembl Gene ID:

ENSAPLG00000015197

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015944

41118948 - 41236452

117505

ENSAPLT00000032737

41118436 - 41236452

118017