About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41158301_41158441_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41158301 - 41158441
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GGTTCAAATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTGGTTCAAAT
Flanking Amino Acid:
DNNQTQKTFKNKETLIMEQE
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
77.3
0.68
1
81.5
27
Major PPT
65.2
0.34
1.1
60.5
44.1
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
48.1
-0
2.1
73.05
44

Associated Gene:

Gene:
PPP1R12A
Ensembl Gene ID:
ENSAPLG00000015197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027679
41112823 - 41236452
123630
ENSAPLT00000039875
41112823 - 41236452
123630
ENSAPLT00000015944
41118948 - 41236452
117505
ENSAPLT00000035807
41112823 - 41236452
123630
ENSAPLT00000033917
41125784 - 41236452
110669
ENSAPLT00000032737
41118436 - 41236452
118017