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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41173717_41192084_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41173717 - 41192084
Intron Length:
18368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGGCTT
5'SS Class:
major
3'SS Sequence:
TTTCTATTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTTGTTTACCA
Flanking Amino Acid:
AASCGYLDIAEYLISQGAHV
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
67.1
44
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
80
0.68
1
77.4
35.8
Minor 5ss
38
-1.4
3.5
53.1
44.8
Minor BPS
55.2
0.16
2
70.26
42.8

Associated Gene:

Gene:
PPP1R12A
Ensembl Gene ID:
ENSAPLG00000015197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033917
41125784 - 41236452
110669
ENSAPLT00000032737
41118436 - 41236452
118017
ENSAPLT00000027679
41112823 - 41236452
123630
ENSAPLT00000039875
41112823 - 41236452
123630
ENSAPLT00000015944
41118948 - 41236452
117505
ENSAPLT00000035807
41112823 - 41236452
123630