Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4122951_4131310_F

Intron Information:

Intron Rank:

142540

Intron Class:

major

Intron Phase:

Intron Coordinates:

4122951 - 4131310

Intron Length:

8360

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATCTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGGCTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TAATTCTTAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

80.7

34.7

Major BPS

0.92

0.9

86.2

29.1

Major PPT

82.8

0.74

0.9

73.5

41.8

Minor 5ss

49.9

-0

2.8

73.7

42.8

Minor BPS

76.1

0.8

1.1

76.13

33.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026810

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033084

4122822 - 4149366

26545