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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41276599_41286691_F

Intron Information:

Intron Rank:
132128
Intron Class:
major
Intron Phase:
Intron Coordinates:
41276599 - 41286691
Intron Length:
10093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCCCCTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
76.8
34.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.5
0.53
0.9
66.7
39.3
Minor 5ss
39.6
-1.2
2.8
49.3
46.9
Minor BPS
64.8
0.46
1.8
79.61
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021008
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035981
41274531 - 41288923
14393