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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41286765_41287638_F

Intron Information:

Intron Rank:
132129
Intron Class:
major
Intron Phase:
Intron Coordinates:
41286765 - 41287638
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTTTCTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
69.5
41.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.4
0.86
0.7
81.4
35
Minor 5ss
38.7
-1.3
3.1
51.6
45.2
Minor BPS
67.2
0.52
1.5
74.74
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021008
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035981
41274531 - 41288923
14393