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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41305834_41306473_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41305834 - 41306473
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCGGACTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAA
U12 Branch Point Sequence:
GCTTCACTAACA
Flanking Amino Acid:
LQSVQVFGRKKTATAVAHCK
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
58.9
0.22
1
49.8
35.1
Major PPT
68.8
0.42
0.9
59
42.1
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
56.3
0.19
2
70.45
41.2

Associated Gene:

Gene:
RPS16
Ensembl Gene ID:
ENSAPLG00000015907
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016595
41305778 - 41348187
42410