About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41307421_41308497_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41307421 - 41308497
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TCTTTCTTAACA
Flanking Amino Acid:
KGGGHVAQIYAIRQAISKAL
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
73.8
42.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
84.1
0.77
0.8
80.8
29.7
Minor 5ss
37.2
-1.5
3.6
57.4
46.8
Minor BPS
85.3
1.1
1
86.69
32.1

Associated Gene:

Gene:
RPS16
Ensembl Gene ID:
ENSAPLG00000015907
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016595
41305778 - 41348187
42410