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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41331229_41333501_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41331229 - 41333501
Intron Length:
2273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTATCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
AGTTTGGTAATT
Flanking Amino Acid:
YISSCMNDLCRVDDDETYCR
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
85
0.79
0.8
82.3
33.9
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
46.2
-0.2
2.5
70.14
41.5

Associated Gene:

Gene:
OTOGL
Ensembl Gene ID:
ENSAPLG00000015946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042763
41321719 - 41412407
90689
ENSAPLT00000016651
41321719 - 41412407
90689