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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41335612_41337029_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41335612 - 41337029
Intron Length:
1418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTCAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTATTTATCC
Flanking Amino Acid:
IWNCTDHDCPAECSITGNSH
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
85.9
29.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.9
0.69
1
80.1
32.3
Minor 5ss
47.1
-0.3
2.7
68.3
42.6
Minor BPS
59
0.26
1.8
70.85
40.8

Associated Gene:

Gene:
OTOGL
Ensembl Gene ID:
ENSAPLG00000015946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042763
41321719 - 41412407
90689
ENSAPLT00000016651
41321719 - 41412407
90689