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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41343120_41344838_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41343120 - 41344838
Intron Length:
1719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGATTT
5'SS Class:
major
3'SS Sequence:
CACTTTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTCACTTTATTT
Flanking Amino Acid:
VDPCNINQQNVGYASHCDII
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76
33.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76
0.58
0.8
74
35
Minor 5ss
50.5
0.02
2.8
70.3
41.4
Minor BPS
54.8
0.23
1.6
68.94
42.6

Associated Gene:

Gene:
OTOGL
Ensembl Gene ID:
ENSAPLG00000015946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042763
41321719 - 41412407
90689
ENSAPLT00000016651
41321719 - 41412407
90689