About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41347469_41349337_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
41347469 - 41349337
Intron Length:
1869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TAGTCAGTGTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AGATTTTGAACT
Flanking Amino Acid:
GEILPTPTGSWEQLISFNLY
Intron Amino Acid Position:
724

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.9
36.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
49.8
-0
1.2
53.5
45
Minor 5ss
43.5
-0.7
3.1
57.4
41.8
Minor BPS
60.9
0.42
1.4
72.72
37.7

Associated Gene:

Gene:
OTOGL
Ensembl Gene ID:
ENSAPLG00000015946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042763
41321719 - 41412407
90689
ENSAPLT00000016651
41321719 - 41412407
90689