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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41352052_41353267_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41352052 - 41353267
Intron Length:
1216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCGAT
U12 Branch Point Sequence:
TCTTCCTTACAG
Flanking Amino Acid:
GEVIATPCYTCVCRRGIFNC
Intron Amino Acid Position:
828

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
68.4
36.9
Major BPS
60.9
0.27
1.3
58.4
40.3
Major PPT
85.6
0.8
0.7
79.7
25.9
Minor 5ss
27.7
-2.6
3
31.6
37.6
Minor BPS
62.7
0.26
1.8
68.4
44.9

Associated Gene:

Gene:
OTOGL
Ensembl Gene ID:
ENSAPLG00000015946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042763
41321719 - 41412407
90689
ENSAPLT00000016651
41321719 - 41412407
90689