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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41389390_41390530_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41389390 - 41390530
Intron Length:
1141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATCACT
Flanking Amino Acid:
AHIEKCPSNQVSPASTSGLC
Intron Amino Acid Position:
1222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.9
0.76
0.9
83.4
32
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
57.2
0.31
2
83.99
37.1

Associated Gene:

Gene:
OTOGL
Ensembl Gene ID:
ENSAPLG00000015946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042763
41321719 - 41412407
90689
ENSAPLT00000016651
41321719 - 41412407
90689