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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41398165_41398485_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41398165 - 41398485
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TCATATCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTAAAAT
Flanking Amino Acid:
PLSCCPEYRCECDPSVCFNA
Intron Amino Acid Position:
1603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71
34.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.4
0.59
0.9
69.4
36.4
Minor 5ss
28.7
-2.4
3.5
34
43.2
Minor BPS
58
0.33
1.8
75.95
41.3

Associated Gene:

Gene:
OTOGL
Ensembl Gene ID:
ENSAPLG00000015946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042763
41321719 - 41412407
90689
ENSAPLT00000016651
41321719 - 41412407
90689