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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41398594_41399082_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41398594 - 41399082
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
GTTTTTCATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATT
Flanking Amino Acid:
EDPCCFSYVCVCESCIDPVP
Intron Amino Acid Position:
1639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72
32.5
Major BPS
100
1.24
0.5
100
0
Major PPT
79.5
0.66
0.9
78.6
35
Minor 5ss
32.3
-2
3
36.7
41.7
Minor BPS
60.5
0.41
1.7
78.42
39.1

Associated Gene:

Gene:
OTOGL
Ensembl Gene ID:
ENSAPLG00000015946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042763
41321719 - 41412407
90689
ENSAPLT00000016651
41321719 - 41412407
90689