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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41399714_41399799_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41399714 - 41399799
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
ACTGACTGATAT
Flanking Amino Acid:
PGRCCPEWHCECSCENATMV
Intron Amino Acid Position:
1708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
85.5
30.7
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
87.2
0.84
0.7
84.7
30.2
Minor 5ss
41.9
-0.9
2.9
57.4
41.1
Minor BPS
42.2
-0.5
1.9
57.57
44.6

Associated Gene:

Gene:
OTOGL
Ensembl Gene ID:
ENSAPLG00000015946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042763
41321719 - 41412407
90689
ENSAPLT00000016651
41321719 - 41412407
90689