Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41399845_41401802_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

41399845 - 41401802

Intron Length:

1958

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTGCTGCCC

5'SS Class:

weak_major

3'SS Sequence:

CTTTTGGTGTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

TTTTTTTTCACT

Flanking Amino Acid:

NATMVTCKLVKKDDVCIFQE

Intron Amino Acid Position:

1723

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.1

0.07

1.1

44.2

37.5

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

73.2

0.52

1.1

72.6

42.4

Minor 5ss

27.3

-2.6

3.3

33.8

35.4

Minor BPS

72.2

0.78

1.7

90.89

33.1

Associated Gene:

Gene:

OTOGL

Ensembl Gene ID:

ENSAPLG00000015946

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042763

41321719 - 41412407

90689

ENSAPLT00000016651

41321719 - 41412407

90689