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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41438455_41439216_F

Intron Information:

Intron Rank:
132428
Intron Class:
major
Intron Phase:
Intron Coordinates:
41438455 - 41439216
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCACGCACC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTACACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77
36.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.8
0.69
0.9
76.8
36.1
Minor 5ss
29.3
-2.4
4
43.8
43.7
Minor BPS
68.2
0.57
1.4
76.88
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021153
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024105
41438360 - 41446335
7976