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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41439368_41439928_F

Intron Information:

Intron Rank:
132429
Intron Class:
major
Intron Phase:
Intron Coordinates:
41439368 - 41439928
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATGTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82
0.72
0.8
77.3
36.8
Minor 5ss
38.9
-1.2
2.8
49.3
46.5
Minor BPS
54.9
0.23
1.9
74.38
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021153
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029803
41436542 - 41445097
8556
ENSAPLT00000024105
41438360 - 41446335
7976
ENSAPLT00000038753
41437617 - 41440134
2518