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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41440036_41440525_F

Intron Information:

Intron Rank:
132430
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
41440036 - 41440525
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTATGTTCA
5'SS Class:
weak_major
3'SS Sequence:
ATCTTTACCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTATCTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
63.6
36.9
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
76.7
0.6
0.8
74.5
34.3
Minor 5ss
49.5
-0
2.4
68.6
42
Minor BPS
74.1
0.83
1.5
88.57
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021153
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038526
41439729 - 41446958
7230
ENSAPLT00000029803
41436542 - 41445097
8556
ENSAPLT00000024105
41438360 - 41446335
7976