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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41440624_41444631_F

Intron Information:

Intron Rank:
132431
Intron Class:
major
Intron Phase:
Intron Coordinates:
41440624 - 41444631
Intron Length:
4008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CTTAATTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.3
26.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
80.2
0.68
0.7
76.3
25.8
Minor 5ss
32.8
-2
3
40.8
45.7
Minor BPS
49
0.01
1.9
68.97
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021153
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038526
41439729 - 41446958
7230
ENSAPLT00000029803
41436542 - 41445097
8556
ENSAPLT00000024105
41438360 - 41446335
7976