Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41444795_41446178_F

Intron Information:

Intron Rank:

132432

Intron Class:

major

Intron Phase:

Intron Coordinates:

41444795 - 41446178

Intron Length:

1384

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGGACA

5'SS Class:

strong_major

3'SS Sequence:

GAATTTACTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAA

U12 Branch Point Sequence:

TTTTCTCTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

75.1

34.6

Major BPS

0.82

0.8

83.9

25.3

Major PPT

66.5

0.37

60.2

Minor 5ss

34.3

-1.8

3.1

41.3

Minor BPS

0.86

1.6

92.5

29.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021153

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038526

41439729 - 41446958

7230

ENSAPLT00000024105

41438360 - 41446335

7976