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Intron Name: Anas_platyrhynchos_platyrhynchos_1_41448000_41449221_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

41448000 - 41449221

Intron Length:

1222

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAA|GCATAATAA

5'SS Class:

weak_major

3'SS Sequence:

AGAACCTGCAAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TACTCAT

U12 Branch Point Sequence:

TCTTTCAGAACC

Flanking Amino Acid:

MGLYKTPVQPEGLKFFNVS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.6

0.18

1.3

53.6

33.7

Major BPS

87.1

0.92

0.7

85.9

22.5

Major PPT

47.2

-0.1

1.1

40.8

37.6

Minor 5ss

34.1

-1.8

4.1

45.8

44.1

Minor BPS

58.2

0.24

1.8

71.87

39.1

Associated Gene:

Gene:

PTPRQ

Ensembl Gene ID:

ENSAPLG00000016187

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016904

41447973 - 41553229

105257